PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58261.1.p
Common NameBRADI_2g58261, LOC100837781
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 303aa    MW: 32247.9 Da    PI: 4.3056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056280301323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C+ C+k+F +   Lk+H +  H
  Bradi2g58261.1.p 280 CKSCSKTFGSDAALKSHEKAkH 301
                       *****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.533278302IPR007087Zinc finger, C2H2
PROSITE patternPS000280280301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTMIKFWGVE VKPGQTVSCD GGHDHIIHVS QAALVETKKG SGNVVVSTKI DDQKVIIGTL  60
SAENHPQILC DLNFQKKFEL SHNSETASVF VCGYQSFMPD EFDPDSSEDE DEVEAVNNQV  120
INNVGGIHEV TAPAKDGKKG TDGNGSDDDS DDDLLDLLSS GDDEMTDDDS SSEEDDTTSE  180
EDDTSSEEDD ISSEESSSDE EDEETLKEPE ISKKRVAATA LKAPASDKKA KIATPSGQKT  240
ASDDKKATHV TTPHPAKQAK TPANSKPKKS PKSTGGTVAC KSCSKTFGSD AALKSHEKAK  300
HE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232716.10.0PREDICTED: histone deacetylase HDT2-like isoform X1
TrEMBLA0A0Q3GL050.0A0A0Q3GL05_BRADI; Uncharacterized protein
STRINGOB05G35770.18e-71(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-23histone deacetylase 3